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πŸš€ 3rd and Final Round live! | Make your first submission with the starter kit

πŸ’‘ Try out this interesting new method

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πŸ•΅οΈ Introduction

There are so many distinct odors in everything we see or interact with. Our reactions to different smells are almost always instant and instinctual, not cultivated. A particular smell can sometimes trigger a specific memory too. Still, most of us would not know how our brain categorizes different smells from different sensory inputs.

What happens when particles responsible for smell enter our nose?

Our noses have more than 400 types of olfactory receptors expressed in 1 million+ olfactory sensory neurons, which are all on a small tissue - olfactory epithelium. The olfactory sensory neurons send signals to the olfactory bulb in the brain and then to more structures from there, to understand the smell.

We are turning this process digital!

In our noses, what finally goes in are particles that have odorant molecules responsible for the smell. These molecules are the actual building blocks of all fragrances. For this challenge, we take these molecular compounds as an input, parse them through, and predict what multitude of fragrances they contain out of 100+ different ones.

jasmin

ethereal,jasmin,aldehydic,fruity

green,herbal,powdery,grass

cacao,floral,honey

πŸ’Ύ Dataset

The dataset contains the description of molecules (as its SMILES string), and the odors it possesses. The challenge is a multiclassification problem, each molecule has multiple odors written in a form of a sentence with a single , between each odor. Following are the columns in the dataset with their description:

  • SMILES: Simplified molecular-input line-entry system (SMILES) is a specification in the form of a line notation for describing the structure of chemical species using short ASCII strings.

  • SENTENCE (target): Its a combination of the odors of the molecules. Each odor is separated by a , to form an (odor) sentence.

πŸ“ Files

v0.1

Following files are available in the resources section:

  • train.csv - (4316 molecules) : This csv file contains the attributes describing the molecules along with their "Sentence" .
  • test.csv - (1079 molecules) (Round-1) : File that will be used for actual evaluation for the leaderboard score but does not have the "Sentence" for molecules.
  • vocabulary.txt : A file containing the list of all odors present in the dataset

πŸ–Š Evaluation Criteria

The evaluation of the submissions is done using the Jaccard Index / Tanimoto Similarity Score.
Description of odour can be heteregenous based on personal experience, perfumer, company, so it is hard to expect to get an unique and perfect description. In this case, we can evaluate the best sentence matching in proposed Top 5 sentences.

For example, if for a single molecule, the ground truth is : floral, green, rose and the top-5 proposed sentences are :

  • rose, green, apricot
  • floral, muguet, jasmin
  • floral, rose, green
  • floral, green, melon
  • muguet, rose, woody

Then the Jaccard Index is computed for all the top-5 sentences in comparison to the ground truth, and the best score across all the 5 predictions is considered for the said molecule. When comparison the individual sentences with the ground-truth sentences, only the first 3 words from the ground truth sentence are considered.

The overall score is computed by taking the mean of the said score across all the molecules in the test set.

Round-2 Evaluation Criteria

For Round 2, you can choose a subset of the whole vocabulary(composed of 109 smell words) and create your own - if you believe that it improves your accuracy.

Read on to understand how it works πŸ‘‡

Lets define :

  • voc_gt : (the ground truth vocabulary) as the set of smell words in the actual challenge dataset (ground truth). 109 distinct smell words as present in the training set and test set of Round-1.
  • voc_x : (submission vocabulary) as a subset of voc_gt, on which participants choose to train their models on, and sample their predictions from. voc_x has to be composed of atleast 60 distinct smell words. This is estimated as the set of all distinct smell words used across all the predictions made by the model.
  • model_compression: We define the model compression as :
    1 - [len(voc_x) / len(voc_gt)].
  • For every 1% model compression, we expect to have an improvement in accuracy of atleast 0.5%.
  • top_5_TSS_voc_x, top_2_TSS_voc_x : This refers to the top_5_TSS and top_2_TSS computed using the vocabulary used by the participants. When computing this metric, any smell word which is not present in voc_x is removed from the ground truth sentences.
    • top_5_TSS : The Jaccard Index computed using the top-5 sentences in comparison to the ground truth (as described for Round 1 above)
    • top_2_TSS: The Jaccard Index computed using the top-2 sentences in comparison to the ground truth (as opposed to top 5 for top_5_tss)
  • top_5_TSS_voc_gt, top_2_TSS_voc_gt : This refers to the top_5_TSS and top_2_TSS computed using the vocabulary present in the ground truth data. Here, this is exactly the same as top_5_TSS and top_2_TSS
  • Finally, adjusted_top_5_TSS, adjusted_top_2_TSS
    • The adjusted scores are computed like this πŸ‘‡
if (top_5_TSS_voc_x - top_5_TSS_voc_gt) >= 0.5 * model_compression : 
    adjusted_top_5_TSS = top_5_TSS_voc_x
    adjusted_top_2_TSS = top_2_TSS_voc_x
else:
    adjusted_top_5_TSS = top_5_TSS_voc_gt
    adjusted_top_2_TSS = top_2_TSS_voc_gt

So, if the improvement in accuracy between voc_x and voc_gt is greater than the expected 0.5 * model_compression, then we use the improved voc_x accuracy, else we use the original voc_gt accuracy.

The leaderboard is sorted based on adjusted_top_5_TSS as the primary score, and the adjusted_top_2_TSS as the secondary score.

During the course of Round-2, all the scores are based on 60% of the whole test data, and the final leaderboards on the whole test data will be released at the end of Round-2.

Round 2 submissions are code-based as compared to csv-based submissions in Round 1. More on that below.

πŸš€ Submission

Round - 1

  • Prepare a CSV file containing header as SMILES, PREDICTIONS.

  • The SMILES column has to contain the SMILES values as mentioned in the test set

  • The PREDICTIONS column has to contain the the top-5 predictions of your model separated by ; where each of the odors in each sentence is separated by ,
    For example, if the value of the PREDICTIONS column for a particular row is :
    coconut,cooling,watery;ambergris,plum,ripe;almond,gourmand,pungent;cognac,dry,medicinal;geranium,lactonic,medicinal
    Then, the top-5 predictions of your model are :

  • coconut,cooling,watery

  • ambergris,plum,rip

  • almond,gourmand,pungent

  • cognac,dry,medicinal

  • geranium,lactonic,medicinal

    Note: If any of the sentences contain more than 3 words, then only the first 3 words will be considered for evaluation.

  • Sample submission format available at sample_submission.csv in the Resources section.

Round-2

Round-2 requires participants to submit their code which will be evaluated on our evaluation infrastructure. Each submission will have access to the following resources during evaluation :

  • 4 CPU cores
  • 16 GB RAM
  • 1 NVIDIA K80 (optional, needs to be enabled in aicrowd.json)

All submissions will have a 10 minute setup time for loading their models, any preprocessing that they need, and then they are expected to make a single prediction in less than 1 second (per smile string). 

πŸš€ For more instructions on how to make a submission, check out this getting_started_kit

πŸ“… Rounds

The competiton consists of 3 separate Rounds.

  • Round-1 : September 8th, 2020 - October 27th, 2020
  • Round-2 : November 23rd - Jan 10th, 2021
  • Round-3 : Jan 15th, 2021 - Feb 15th, 2021

πŸ† Prizes

The top 2 participants of the Round-3 will be awarded a cash prize of:

  • 1st Prize : CHF 4,000
  • 2nd Prize : CHF 2,000

Round-1 Community Contribution Prize: CHF 1,000 Prize Pool

πŸ“± Contact

πŸ“š Acknowledgement

We have the permission to use Olfactive descriptions and Molecules from "PMP database" authored by Mans Boelens and distributed by Leffingwell & Associates for this challenge.

Getting Started

Notebooks

See all
Learn To Smell Simple Baseline [Score 0.39]
By
sunhwan_jo
11 months ago
0
Where to start? 5 ways to learn 2 smell!
By
shraddhaa_mohan
11 months ago
0
0
FastAI state of art out of box implementation
By
pyanishjain
About 1 year ago
0
Right fingerprint is all you need
By
lacemaker
About 1 year ago
0